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    Home » Gluten Free Dessert Recipes

    Microwave Chocolate Chip Cookie

    Published: Aug 18, 2023 by Lee · This post may contain affiliate links · 7 Comments .

    Jump to Recipe Jump to Video

    This Microwave Chocolate Chip Cookie is soft, buttery and full of gooey chocolate! It takes less than 10 minutes to make (including a 45 second cook time and a 5 minute rest time) and couldn't be easier to mix up! Whether you're a college student with only a microwave, someone who doesn't have access to an oven or don't feel like waiting 20 minutes for a cookie to bake...this microwavable cookie is for you! Best yet, it's gluten free, nut free, eggless and can easily be vegan!

    A perfect gluten free Microwave Chocolate Chip Cookie with delicious slightly melted chocolate chips.

    This Microwave Chocolate Chip Cookie is so simple to make! You only need a whisk or a spatula and a few simple ingredients! But can you microwave cookie dough and have it taste like a normal cookie? Yes you can! Just make sure not to over microwave it! This single-serving chocolate chip cookie is so perfect for when you need a sweet treat in under 10 minutes!

    For more chocolate chip cookie recipes, try my Small Batch Chocolate Chip Cookies, my Eggless Chocolate Chip Cookies, my No Butter Chocolate Chip Cookies and my Happy Birthday Cookie!

    Jump to:
    • Reasons to Love This Cookie
    • Ingredient Notes
    • Substitutions and Variations
    • How to Make a Microwave Chocolate Chip Cookie 
    • Expert Baking Tips
    • Recipe FAQs
    • Other Small Batch Recipes You'll Love
    • 📖 Recipe
    • Microwave Chocolate Chip Cookie

    Reasons to Love This Cookie

    • Allergy Friendly- This microwave cookie is gluten free, nut free, egg free and can easily be dairy free (vegan)!
    • Soft & Gooey Inside- This cookie is chewy and oozing with chocolate inside!
    • Chocolate Chips- It is loaded and topped with chocolate chips!
    • Easy To Make- This cookie dough mixes up in a matter of minutes with just a spatula or a whisk like my Cookie Mug Cake!

    Ingredient Notes

    Baking powder, gluten free flour, vanilla, dark brown sugar, kosher salt, milk, chocolate chips and butter in separate containers.
    • Gluten Free Flour- If you also have nut allergies, make sure to use a brand that’s made in a nut free facility.  I really love to use this gluten free flour because it’s free of the top 9 allergens. It also contains xanthan gum which really helps give baked goods their bounce and prevents them from falling apart.
    • Butter/ Vegan Baking Stick- In this cookie recipe, we are using melted butter or vegan baking stick!
    • Dark Brown Sugar- I use brown sugar instead of granulated for added moisture like in my Dark Chocolate Chip Cookies. 
    • Milk- If there are no dairy allergies or if you’re not vegan, you can use regular whole milk. For non-dairy, use a dairy-free milk of your choosing. 
    • Chocolate Chips- To keep vegan, make sure to use gluten free/vegan chocolate chips. I love these allergy friendly chocolate chips.

    See my recipe card below for a complete list of the ingredients with measurements.

    Substitutions and Variations

    How to Make these Vegan Chocolate Chip Cookies

    • Use a gluten free flour that’s free from dairy.
    • Make sure the brand of sugar you use is vegan. 
    • Use vegan baking sticks instead of butter.
    • Only use a non-dairy milk of choice.
    • Read the label on your chocolate chips to ensure they’re gluten free, nut free and vegan. 

    Make this Recipe with All Purpose Flour

    • Use 3 ½ tablespoons of packed AP flour (44 grams).

    This recipe has not been tested with these substitutions and/or variations due to celiac disease and food allergies. If you change any of the ingredients, please let us know how the recipe turned out in the comments below!

    A bite through the delicate crisp outer shell reveals the soft interior of the microwave cookie.

    How to Make a Microwave Chocolate Chip Cookie 

    Here are the step by step instructions for this microwave cookie recipe!

    A whisk with the dry ingredients.

    Step 1: Whisk Together the Dry Ingredients

    In a medium bowl, whisk together the gluten free flour, baking powder and salt until combined.

    Melted butter in a glass bowl.

    Step 2: Melt the Butter

    In a microwave safe medium bowl, melt the butter in 11 seconds increments until completely melted.

    Adding in vanilla, and milk into the brown sugar and butter.

    Step 3: Add in the Wet Ingredients and Brown Sugar

    Into the bowl with the melted butter, whisk in the vanilla and dark brown sugar until combined and thick.

    Once combined, mix in the milk until everything is liquidy.

    Finishing mixing the batter by hand, leaving finger indents in the dough.

    Step 4: Add in the Dry Ingredients 

    Slowly add in the gluten free flour mixture a little at a time until just combined. Use a spatula to scrape down the sides and combine.

    Do this process very slowly. If you add the flour too quickly, the dough will be too wet.

    Once combined, use clean hands to knead everything into a smooth dough. This should only take a few times before it all comes together.

    Flattening the cookie into a 3 inch disc and pressing additional chips to the top.

    Step 5: Fold in the Chocolate Chips, Form a Disc and add More Chips

    Gently fold in the chocolate chips using a spatula or clean hands.

    Shape the dough into a round thick disc that is 3 inches in diameter. Do not make the diameter larger than 3 inches otherwise the cookie is more likely to spread out while cooking.

    Whatever chocolate chips might have fallen out during flattening it into a thick disc, press those extra chips into the top of the cookie. If no chips fell out, feel free to add additional chips into the top of the cookie.

    A fresh Microwave Chocolate Chip Cookie on a cooling rack.

    Step 6: Cook in the Microwave

    Place the dough disc on a piece of parchment paper. Do not grease.

    Microwave and for 45 seconds on high. Carefully lift the cookie out of the microwave with the parchment paper or by lifting underneath the parchment paper with a large spatula and place on a cooling rack.

    Immediately reshape the cookie by using a spatula to push it into a circle shape and let it cool for 5 minutes.

    Expert Baking Tips

    • Use Packed Tablespoons of Flour- Normally in baking we do not use packed flour but when working with gluten free, I've found using packed works best to help the baked goods keep their shape. You must use packed in the recipe but it's even better to use the exact gram measurement (44 grams). Adding too little flour will cause the cookie to spread out into a giant mess in the microwave.
    • Use Clean Hands- No need to get out your hand held mixer or electric mixer. Once all the ingredients are combined, use clean hands to gently knead the dough to be smooth. You only need to do it a couple of times for the dough to be smooth and combined. You can refer to my video for a visual.
    • Do Not Over-Cook- If you over-cook this eggless chocolate chip cookie it will be rock hard once it cools off. Every microwave is different obviously, but the cookie cooks for 45 seconds exactly in my microwave. It will still be very soft when it is finished cooking.
    • Reshape the Cookie- If you want your cookie nice and round, reshape it as soon as it comes out of the microwave. Use a spatula to push it back into a circle shape.
    • Let it Cool- Microwavable cookies are very delicate. You must let the cookie sit for 5 minutes after cooking otherwise it will fall apart. Even after that it is fragile, so be careful when picking it up.

    Recipe FAQs

    Can I make this cookie ahead of time?


    I would not. This is a single-serving cookie that is meant to be eaten right away. Once it is cool, it dries up.

    If you want to make cookies ahead of time, I would use the recipe for my Eggless Chocolate Chip Cookies. They have lots of added moisture.

    Can I use another sugar instead of dark brown?


    I don’t recommend using a different sugar. 

    Eggless cookies can be very dry and the dark brown sugar adds lots of moisture. In addition, it gives the cookie that nice golden color.

    Why did my cookie spread?


    You need to be super precise with the measurements. If you are off ever so slightly, the cookie will spread while cooking.

    In addition, make sure you let the butter cool a little to thicken it.

    Also, when adding the flour into the wet ingredients make sure you do it very slowly. If you add the flour too fast, the dough will end up very wet.

    And lastly, make sure the dough disc is 3 inches in diameter. If you make the cookie too flat, it will spread out while cooking.

    How do I store this Microwave Chocolate Chip Cookie?


    I really wouldn't store it but if you're going to, wrap it in foil and store at room temperature for 1 day.

    A Microwave Chocolate Chip Cookie with a bite taken, ready to be continued to be enjoyed.

    Other Small Batch Recipes You'll Love

    • A Small Batch Brownie square with a crinkly top and soft chocolatey interior.
      Small Batch Brownies
    • A delicious Small Batch Chocolate Cupcake with pink and red round sprinkles.
      Small Batch Chocolate Cupcakes
    • Crystallized sugar sparkles off this bitten Sugar Cookie like tiny diamonds.
      Small Batch Sugar Cookies
    • Small Batch Chocolate Chip Cookies on a cooling rack.
      Small Batch Chocolate Chip Cookies

    Did you try this recipe? Please leave me a ⭐ review below!

    Don’t forget to tag me on Instagram @laneandgreyfare and follow along on Pinterest, Facebook and YouTube! Enjoy!!! 

    📖 Recipe

    A perfect gluten free Microwave Chocolate Chip Cookie with delicious slightly melted chocolate chips.

    Microwave Chocolate Chip Cookie

    Author: Lee
    This Microwave Chocolate Chip Cookie is soft, buttery and full of gooey chocolate! It takes less than 10 minutes to make (including a 45 second cook time and a 5 minute rest time) and couldn't be easier to mix up! Whether you're a college student with only a microwave, someone who doesn't have access to an oven or don't feel like waiting 20 minutes for a cookie to bake...this microwavable cookie is for you! Best yet, it's gluten free, nut free, eggless and can easily be vegan!
    5 from 9 votes
    Print Recipe Pin Recipe
    Prep Time 4 minutes mins
    Cook Time 1 minute min
    Rest Time 5 minutes mins
    Total Time 10 minutes mins
    Course Dessert
    Cuisine American
    Servings 1 large cookie
    Calories 469 kcal

    Ingredients
     
     

    • 3.5 tablespoons gluten free flour  (I use a gluten free multipurpose flour with xanthan gum already in it)
    • ⅛ teaspoon baking powder (Yes, baking powder...not baking soda!)
    • 1 pinch kosher salt
    • 1 tablespoon unsalted butter or vegan baking stick, melted
    • 2 tablespoons dark brown sugar , packed
    • ½ tablespoon milk
    • ⅛ teaspoon pure vanilla extract
    • 2.5 tablespoons chocolate chips

    Instructions
     

    • In a medium bowl, combine the 3.5 tablespoons gluten free flour, ⅛ teaspoon baking powder and 1 pinch of kosher salt. Whisk to combine.
    • In a microwave safe medium bowl, melt the 1 tablespoon butter or vegan baking stick in 11 seconds increments until completely melted.
    • Into the bowl with the melted butter, whisk in the ⅛ teaspoon vanilla and the 2 tablespoons dark brown sugar until combined and thick. 
      Once combined, mix in the ½ tablespoon milk until everything is liquidy. 
    • Slowly add in the gluten free flour mixture a little at a time until just combined. Use a spatula to scrape down the sides and combine.
      Make sure you do this process very slowly. If you add the flour too quickly, the dough will be too wet. 
    • Once combined, use clean hands to knead everything into a dough. This should only take a few times before it all comes together. 
    • Gently fold in the 2 ½ tablespoons of chocolate chips using a spatula. This may be a bit tricky due to the shiny dough. I like to help mix them in with clean hands.
    • Shape the dough into a round thick disc that is 3 inches in diameter. Do not make the diameter larger than 3 inches otherwise the cookie is more likely to spread out while cooking. 
      Whatever chocolate chips might have fallen out during flattening it into a thick disc, press those extra chips into the top of the cookie. If no chips fell out, feel free to add additional chips into the top of the cookie.
    • Place the dough disc on a piece of parchment paper. Do not grease. 
      Pop in the microwave and cook for 45 seconds on high. Carefully lift the cookie out of the microwave with the parchment paper or by lifting underneath the parchment paper with a large spatula and place on a cooling rack. 
    • Immediately reshape the cookie by using a spatula to push it into a circle shape. Microwave cookies are super soft right after cooking, so let it cool for 5 minutes. If you don't do this, the cookie will break apart into a giant mess.

    Video

    Notes

    Cook Time: Only cook the cookie for 45 seconds, not 1 minute. The recipe card does not allow for times that are less than 1 minute, which is why it says that. 
    Vegan: Use a dairy free gluten free flour, vegan sugar, vegan baking sticks, a non dairy milk and vegan chocolate chip cookies.
    All Purpose Flour: I cannot test this due to celiac disease, but use 3.5 packed tablespoons of regular flour (44 grams). 
    Storing: I really wouldn't store it but if you're going to, wrap the cookie in foil and store at room temperature for 1 day.
    Nutrition: The info below is a generated estimate and is not guaranteed to be accurate.

    Nutrition

    Calories: 469kcalCarbohydrates: 66gProtein: 3gFat: 23gSaturated Fat: 14gPolyunsaturated Fat: 1gMonounsaturated Fat: 3gTrans Fat: 0.5gCholesterol: 31mgSodium: 103mgPotassium: 155mgFiber: 3gSugar: 46gVitamin A: 362IUCalcium: 105mgIron: 1mg
    Tried this recipe?Let us know how it was!

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    Reader Interactions

    Comments

    1. Kaiya

      March 07, 2025 at 5:07 pm

      5 stars
      loved this so much! a perfect after school snack!

      Reply
    2. Maja

      November 01, 2024 at 1:51 pm

      5 stars
      Super tasty!!

      Reply
    3. Maja Karlström

      November 01, 2024 at 1:51 pm

      It was really good!! I didn't expekt that it acually worked!!

      Reply
    4. Salamah

      June 09, 2024 at 5:16 am

      This is the best microwave cookie ever! So simple and tasty 😋

      Reply
    5. Allison

      August 27, 2023 at 10:00 pm

      5 stars
      Great recipe! for all you non GF people, this pretty much turned out for me it was just a little more runny. still tasty tho so five stars 🙂

      Reply
    6. Elaine Adamo

      August 18, 2023 at 10:51 pm

      5 stars
      Can’t wait to try this!
      I am the only one in my household with a sweet tooth so this is perfect.

      Reply
    7. John

      August 18, 2023 at 10:35 am

      5 stars
      This cookie was so simple to make and it came out perfect! What a great low mess idea!

      Reply
    5 from 9 votes (4 ratings without comment)

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    Lee, the beautiful founder of Lane and Grey Fare.

    Hi guys, I'm Lee! As a mother of two children with celiac disease and multiple food allergies, I wanted to share all that I’ve learned with others in a way that’s entertaining and helpful. All my food is 100 percent gluten free, nut free, seed free, egg free and most of my baked goods can easily be made dairy free (vegan).

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