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    Home » Gluten Free Breakfast Recipes » Gluten Free Muffin Recipes

    Gluten Free Applesauce Muffins

    Published: Oct 19, 2021 · Modified: Oct 8, 2025 by Lee · This post may contain affiliate links · 3 Comments .

    Jump to Recipe Jump to Video

    These Gluten Free Applesauce Muffins are soft and fluffy bakery style muffins with sky-high domes! They have a soft apple flavor and are loaded with cinnamon. They're moist and naturally eggless thanks to the use of applesauce and are so simply to make; no mixer is needed! They're the perfect cozy fall breakfast or snack! If that wasn’t enough, they’re gluten free, nut free, egg free and easily can be made vegan! 

    A delicious halved Gluten Free Applesauce Muffin basking on a plate ready for breakfast.

    These Gluten Free Applesauce Muffins are the perfect combination of apple and cinnamon. My kids are not fans of chunks of apples, hence I like to make my apple recipes with applesauce! It makes for a smoother texture that remains light and fluffy yet still has apple flavor! What's great about this applesauce muffins is that the applesauce acts as an egg replacer, so no cornstarch slurry is needed!

    For more apple recipes, try my Baked Apple Cider Donuts, my Apple Pie Cookies, my Apple Tea Cake, my Applesauce Crumb Cake or my Applesauce Cookies!

    Jump to:
    • Reasons to Love These Gluten Free Applesauce Muffins
    • Ingredient Notes
    • Substitutions and Variations
    • How to Make Gluten Free Applesauce Muffins
    • Expert Baking Tips
    • Recipe FAQs
    • Other Muffin Recipes You'll Love
    • 📖 Recipe
    • Gluten Free Applesauce Muffins

    Reasons to Love These Gluten Free Applesauce Muffins

    • Allergy Friendly- These apple muffins are gluten free, nut free, egg free and can easily be dairy free (vegan)!
    • Light and Airy- These muffins are so light! Not an overly dense work out for your jaw!
    • High Domes- They rise up super tall just like muffins from a bakery!
    • Easy To Make- The batter mixes up with a whisk and spatula...no mixer is needed!

    Ingredient Notes

    Bowls of milk, multipurpose gluten free flour, granulated sugar, light brown sugar, applesauce, baking powder, vegetable oil, ground cinnamon, kosher. salt, pure vanilla extract, and baking soda.
    • Gluten Free Flour- If you also have nut allergies, make sure to use a brand that’s made in a nut free facility.  I really love to use this gluten free flour because it’s free of the top 9 allergens. It also contains xanthan gum which really helps give baked goods their bounce and prevents them from falling apart.
    • Granulated Sugar- We use mostly granulated sugar in this recipe to keep the muffins light and airy.
    • Kosher Salt- Helps draw out all the flavors.
    • Cinnamon- Gives the apple muffins that cozy woodsy flavor that reminds us of fall!
    • Vegetable Oil- This is an apple cinnamon muffin recipe with oil instead of butter/vegan baking stick to help the muffins stay moist.
    • Applesauce- We use store-bought to make this a super quick recipe. If you want to use homemade, check out my Slow Cooker Applesauce but keep in mind it takes 4 hours to make!
    • Light Brown Sugar- We use this in combination with the granulated sugar!
    • Milk- If there are no dairy allergies or if you’re not vegan, you can use regular whole milk. For non dairy, use a non dairy milk of your choosing.
    • Pure Vanilla Extract- Make sure the vanilla you use is pure and gluten free. Using a vanilla that isn't pure will give the cookies and frosting a chemical-like flavor. 
    • Kosher Salt- Helps draw out all the flavors.

    See my recipe card below for a complete list of the ingredients with measurements.

    Substitutions and Variations

    How to Make these into Vegan Muffins

    • Use a gluten free flour that’s free from dairy.
    • Make sure the brand of sugar you use is vegan. 
    • Only use a non-dairy milk of choice.

    Make this Recipe with All Purpose Flour

    • Use 1 ¾ cups plus 2 tablespoons packed cups of AP flour (294 grams plus 2 tablespoons).
    • Only use 1 cup of milk.

    For Other Muffin Sizes

    • Bake at the same temperature for 22-24 minutes or until the tops are golden, risen and springy when carefully touched. Makes 12 regular size muffins.
    • Bake the mini muffins at the same temperature for 20-22 minutes or until the tops are risen and springy when carefully touched. Makes 48 mini muffins.

    This recipe has not been tested with some of these substitutions and/or variations due to celiac disease and food allergies. If you change any of the ingredients, please let us know how the recipe turned out in the comments below!

    The golden brown scored top of the Gluten Free Applesauce Muffin is autumn breakfast perfection.

    How to Make Gluten Free Applesauce Muffins

    Here are the step by step instructions to make these applesauce muffins!

    A whisk with the dry ingredients.

    Step 1: Whisk the Together the Dry Ingredients

    In a large bowl whisk together the gluten free flour, granulated sugar, baking soda, baking powder, cinnamon and salt. Set aside.

    Mixing the wet ingredients with the light brown sugar.

    Step 2: Whisk together the Wet Ingredients and Brown Sugar

    In another large bowl, whisk together the light brown sugar, applesauce, milk, vegetable oil and vanilla until fully emulsified and combined. 

    Mixing the wet and dry ingredients into a muffin batter.

    Step 3: Add the Wet Ingredients to the Dry

    Using a whisk, slowly mix the liquid ingredients into the dry until just combined. If it gets too thick, switch to a spatula.

    Filling a muffin tin with the applesauce muffin batter and smoothing out the tops.

    Step 4: Scoop the Batter

    Using an ice cream scoop, fill the muffin cups about ¾ to the top. Smooth the batter with the back of the spoon or a small knife. Should fill 6 jump cups or 12 regular sized.

    Fresh baked, warm gluten free applesauce muffins on a cooling rack.

    Step 5: Bake the Muffins

    Bake in the center rack of the 375 degree oven for 28 minutes until the muffins are risen and springy when carefully touched.

    When the muffins are out of the oven, let them cool in the pan for about 5-10 minutes. Lastly, remove them from the pan using a small spatula and let cool on a wire cooling rack.

    Expert Baking Tips

    • Use Packed Cups of Flour- Normally in baking we do not use packed cups however, when working with gluten free, I've found using packed cups works best to help the baked goods keep their shape. Or read the gram measurement.
    • Smooth the Batter- Many gluten free batters have a way of staying exactly as they are placed, when baked. When the batter is in the muffin pan, gently smooth the tops with a butter knife prior to baking. 
    • Use Paper Muffin Liners or Grease the Pan- If you don't have any paper liners, grease each muffin tin with vegetable oil prior to adding the batter. Grease the entire pan, yes even the top; these muffins rise up nice and high and spill out of the cups.
    • Fill the Muffin Tins ¾ to the Top- Make sure to fill each muffin cup almost all the way to the top. You want the muffins to have height.
    • Cool the Muffins- Make sure the muffins have cooled at least 5-10 min prior to removing them from the muffin pan. If you do not wait, the muffins will break apart into a giant mess when trying to remove them.

    Recipe FAQs

    How many apple muffins does this recipe make?


    This recipe makes 6 jumbo size muffins.

    It can also make 12 regular size muffins. If doing so, bake them at the same temperature for 22-24 minutes or until the tops are risen and springy when carefully touched.

    It can also make 48 mini muffins. Bake the mini muffins at the same temperature for 20-22 minutes or until the tops are risen and springy when carefully touched.

    The outside of my muffins are super crunchy. Will they soften?


    Yes. When you just bake the muffins they will have a crisp exterior and soft interior. 

    After you store them in an airtight container or in the foil at room temperature overnight, they will be soft on the outside as well. 

    CanI use store bought applesauce?


    Yes! You can! 

    If you’re not using homemade applesauce, make sure you buy a gf/vegan applesauce that is gluten free.

    How do I store these Gluten Free Applesauce Muffins?


    Once the muffins have cooled, store in an airtight container or individually wrap each muffin in aluminum foil. Try to create a teepee with the top of the foil so it isn't touching the top of the muffin as much.

    If wrapped in foil, store them in a zip top bag on the counter at room temperature for up to 2 days or freeze for up to 30 days.
     
    To defrost, take out if the freezer and leave at room temperature until soft; about 1-2 hours.

    If desired, warm each muffin in the microwave for 5-10 seconds at a time until you reach the desired temperature, prior to eating. Be careful not to burn your mouth.

    A Gluten Free Applesauce Muffin cut in half showcasing it's delicious light and sweet interior.

    Other Muffin Recipes You'll Love

    • A scrumptious golden brown gluten free Vanilla Muffin on wax paper.
      Vanilla Muffins
    • A halved Gluten Free Pumpkin Muffin with melted chocolate chips cascading down the warm soft insides.
      Gluten Free Pumpkin Muffins
    • Sliced spongey golden halves of Pumpkin Banana Muffin on a plate.
      Pumpkin Banana Muffins
    • A cross-section of a Jumbo Gingerbread Muffin on a tray.
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    Did you try this recipe? Please leave me a ⭐ review below!

    Don’t forget to tag me on Instagram @laneandgreyfare and follow along on Pinterest, Facebook and YouTube! Enjoy!!! 

    📖 Recipe

    A delicious halved Gluten Free Applesauce Muffin basking on a plate ready for breakfast.

    Gluten Free Applesauce Muffins

    Author: Lee
    These Gluten Free Applesauce Muffins are soft and fluffy bakery style muffins with sky-high domes! They have a soft apple flavor and are loaded with cinnamon. They're moist and naturally eggless thanks to the use of applesauce and are so simply to make; no mixer is needed! They're the perfect cozy fall breakfast or snack! If that wasn’t enough, they’re gluten free, nut free, egg free and easily can be made vegan! 
    5 from 2 votes
    Prevent your screen from going dark
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    Prep Time 15 minutes mins
    Cook Time 28 minutes mins
    Cool Time 5 minutes mins
    Total Time 48 minutes mins
    Course Breakfast
    Cuisine American
    Servings 6 Jumbo Muffins
    Calories 303 kcal

    Ingredients
     
     

    • 1 ¾ cup plus 2 tablespoons multipurpose gluten free flour (I use a gluten free multipurpose flour with xanthan gum already in it)
    • ½ cup granulated sugar
    • 2 teaspoons baking powder
    • ½ teaspoon baking soda
    • 1.5 teaspoons ground cinnamon
    • 2 pinches kosher salt
    • ¼ cup light brown sugar , packed
    • ⅔ cup applesauce
    • 1 ⅓ cups milk
    • 2 tablespoons vegetable oil
    • 1 teaspoon pure vanilla extract

    Instructions
     

    • Preheat your oven to 375 degrees Fahrenheit. Grease a jumbo 6 cup muffin tin with vegetable oil or line with muffin liners.
    • In a large bowl, whisk together the 1 ¾ cups plus 2 tablespoons multipurpose gluten free flour, ½ cup granulated sugar, 2 teaspoons baking powder, ½ teaspoon baking soda, 1.5 teaspoons ground cinnamon and 2 pinches kosher salt. Set aside.
    • In another large bowl, whisk together the ¼ cup packed light brown sugar, ⅔ cup applesauce, 1 ⅓ cups milk, 2 tablespoons vegetable oil and 1 teaspoon pure vanilla extract.
    • Using a whisk, slowly mix the liquid ingredients into the dry until just combined. If it gets too thick, switch to a spatula.
    • Using an ice cream scoop, fill the muffin cups about ¾. Smooth the batter with the back of a spoon or a butter knife.
      You should have 6 jumbo cups filled or 12 regular.
    • Bake in the center rack of the 375 degree oven for 28 minutes or until the muffins are golden on top, risen and springy when carefully touched
    • Once out of the oven, let the muffins cool in the pan for about 5-10 minutes. Then remove from the pan using a small spatula and let cool on a wire cooling rack.

    Video

    Notes

    Regular Muffins: Bake at 375 degrees Fahrenheit for 22-24 minutes or until muffins are risen and springy. Makes 12 regular muffins.
    Mini Muffins: Bake at 375 degrees Fahrenheit for 20-22 minutes or until muffins are risen and springy. Makes 48 mini muffins. 
    Vegan: Use a dairy free gluten free flour, vegan sugar and non-dairy milk.
    All Purpose Flour: I cannot test this due to celiac disease, but use 1 ¾ cups plus 2 tablespoons packed cups of AP flour (294 grams plus 2 tablespoons), only 1 cup of milk.
    Storing: Store cooled muffins in an airtight container or wrapped in foil at room temperature for up to 2 days, or in the freezer for 30 days. To thaw, leave out on the counter wrapped in foil for 2 hours or until soft. If desired, warm each muffin in the microwave for 5-10 seconds at a time (until you reach the desired texture) prior to eating. Be careful not to burn your mouth.
    Nutrition: The info below is a generated estimate and is not guaranteed to be accurate.

    Nutrition

    Calories: 303kcalCarbohydrates: 57gProtein: 5gFat: 8gSaturated Fat: 2gPolyunsaturated Fat: 3gMonounsaturated Fat: 2gTrans Fat: 0.03gCholesterol: 7mgSodium: 386mgPotassium: 117mgFiber: 4gSugar: 32gVitamin A: 97IUVitamin C: 0.3mgCalcium: 182mgIron: 2mg
    Tried this recipe?Let us know how it was!

    More Gluten Free Muffin Recipes

    • A bite into the Lemon Muffin reveals the light, soft and zesty interior.
      Lemon Muffins
    • A bite reveals a light soft interior with dashes of rainbow infusions in this Birthday Muffin.
      Birthday Muffins
    • A perfect baked Oreo Muffin with broken chocolate sandwich cookies and chocolate chips.
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    Comments

    1. Jenny says

      September 15, 2024 at 7:38 pm

      5 stars
      My son LOVED these! They actually look like regular muffins! They stay puffy and he said they are delicious! Big hit!

      Reply
      • Lee says

        September 18, 2024 at 9:25 am

        So glad thank you!

        Reply
    2. John says

      October 19, 2021 at 3:07 pm

      5 stars
      These Jumbo Apple Cinnamon Muffins are the best! Autumn flavor in every bite!

      Reply
    5 from 2 votes

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    Lee, the beautiful founder of Lane and Grey Fare.

    Hi guys, I'm Lee! As a mother of two children with celiac disease and multiple food allergies, I wanted to share all that I’ve learned with others in a way that’s entertaining and helpful. All my food is 100 percent gluten free, nut free, seed free, egg free and most of my baked goods can easily be made dairy free (vegan).

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